Note: to the undirected graph, it needs to write an edge twice in two directions.
Example
Query Network
Target Network
Node Similarity Score
Example Result
Query network and Target network format
For the edges of network, we allow the input as follows:
node1 node2
node3 node4
...
Each line contains one edge, and it is not allowed for special characters in the node names, such as "/","\".
Node similarity file
For the node similarty score, we allow the input as follows:
node1 node2 score1
gene3 gene4 score2
...
Each line contains a node pair and all the separators are tabs.
Reference:Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. An Efficient Network Querying Method Based on Conditional Random Fields. Bioinformatics, 27 (22): 3173-3178, 2011. doi: 10.1093/bioinformatics/btr524.
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