Network Alignment based on CRF

Network alignment based on Conditional Random Fields

Examples

Biological network format

For the edges of network, we allow the input as follows:
node1 node2
node3 node4
...
Each line contains one edge, and it is not allowed for special characters in the node names, such as "/","\".

Node similarity file
For the node similarty score, we allow the input as follows:
node1 node2 score1
gene3 gene4 score2
...
Each line contains a node pair and all the separators are tabs.

Reference:

Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. CNetA: Network alignment by combining biological and tolopogical features. ISB 2012, 220-225.